Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000668

Type of data
NGS (Target Capture)
Access criteria
Controlled-access (Type I)
Total data volume
10.6 GB
File formats
  • BAM
Research
hum0359
Date published
2022-08-07
Date modified
2022-08-07
DDBJ Search
JGAD000668 (opens in a new tab)
JGA Study
JGAS000548 (opens in a new tab)

Analysis method

Targeted DNA sequencing

Materials and participants
Extranodal NK/T-cell lymphoma, nasal type (ICD10: C86.0): 67 cases
  • Health status
    Affected
  • Subject count
    67 (Individual)
Disease
nasal type (C860)
Sample description
DNAs extracted from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
ARID1A, ASXL3, BCOR, CDKN2A, DDX3X, DNMT3A, ECSIT, EP300, FAT4, HDAC9, IDH1, IDH2, JAK1, JAK2, JAK3, KMT2C, KMT2D, MGA, MSN, NRAS, STAT1, STAT3, STAT5A, STAT5B, STAT6, TET1, TET2, TET3, TP53
Reagent kit
xGen Prism DNA Library Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris M220)
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
142 bp
Reference genome
GRCh37
Mapping
CLC Genomics Workbench version 21
Mapping quality
N/A
Coverage (depth)
N/A
Coverage (breadth)
N/A
Data use policy
NBDC data sharing policy (JGAP000001)