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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000665

Type of data
NGS (scRNA-seq, scVDJ-seq)
Access criteria
Controlled-access (Type I)
Total data volume
342 GB
File formats
  • FASTQ
Research
hum0360
Date published
2022-12-13
Date modified
2022-12-13
DDBJ Search
JGAD000665 (opens in a new tab)
JGA Study
JGAS000546 (opens in a new tab)

Analysis method

scRNA-seq + scVDJ-seq

Materials and participants
COVID-19 (ICD10: U07.1): 6 cases (8 samples)
4 cases: blood samples collected on the day or the next day of admission
2 cases: blood samples collected on the day or the next day of admission + after discharge
  • Health status
    Affected
  • Subject count
    6 (Individual)
Disease
COVID-19 (U071)
Sample description
RNAs extracted from PBMCs
  • Tissue
    PBMC, Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
scRNA-seq
VDJ-seq
Target
N/A
Reagent kit
Chromium Single Cell V(D)J
Fragmentation
Enzymatic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
scRNA-seq: 91 bp
scVDJ-seq: 91 bp
90 bp
Data use policy
NBDC data sharing policy (JGAP000001)