Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000640

Type of data
NGS (WGS, Target Capture)
Access criteria
Controlled-access (Type I)
Total data volume
175 GB
File formats
  • FASTQ
Research
hum0340
Date published
2022-08-05
Date modified
2022-08-05
DDBJ Search
JGAD000640 (opens in a new tab)
JGA Study
JGAS000520 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
xgen-pan-cancer-gene-list.xlsx127 mutated genes9.8 KB

Analysis method

WGS

Materials and participants
Adult colorectal cancer (ICD10: C189): 24 cases
FFPE non-tumor tissues: 28 samples
Child retinoblastoma (ICD10: C692): 1 case
FFPE tumor tissues: 3 samples
  • Health status
    Affected
  • Subject count
    25 (Individual)
  • Age group
    Mixed
Disease
Adult colorectal cancer (C189)
Child retinoblastoma (C692)
Sample description
DNAs extracted from FFPE normal tissues and FFPE tumor tissues
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
ThruPLEX DNA-Seq Kit
Fragmentation
N/A
Platform
Illumina HiSeq X
Read type
Paired-end
Read length
100–200 bp
Data use policy
NBDC data sharing policy (JGAP000001)

Targeted DNA sequencing

Materials and participants
Adult glioblastoma (ICD10 : C719): 2 cases
blood cells: 2 samples
fresh frozen tumor tissues: 2 samples
FFPE tumor tissues: 8 samples
  • Health status
    Affected
  • Subject count
    2 (Individual)
  • Age group
    Adult
Disease
Adult glioblastoma (C719)
Sample description
DNAs extracted from peripheral blood cells, fresh frozen tumor tissues, and FFPE tumor tissues
  • Tissue
    Peripheral blood
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
127 mutated genes implicated across 12 tumor tissue types (xGen® Pan-Cancer Panel v1.5)
Reagent kit
ThruPLEX DNA-Seq Kit
Fragmentation
Ultrasonic fragmentation (Covaris S220)
Platform
Illumina HiSeq X
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)