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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000604

Type of data
NGS (Target Capture)
Access criteria
Controlled-access (Type I)
Total data volume
83.9 GB
File formats
  • FASTQ
  • VCF
Research
hum0319
Date published
2022-01-19
Date modified
2022-01-19
DDBJ Search
JGAD000604 (opens in a new tab)
JGA Study
JGAS000487 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
55SNPsList.xlsx55 SNPs11.2 KB

Analysis method

Targeted DNA sequencing

Materials and participants
1,336 men with suspected prostate cancer (ICD10: C61) scheduled for prostate biopsy
  • Health status
    Affected
  • Subject count
    1336 (Individual)
  • Sex
    Male
Disease
men with suspected prostate cancer (C61)
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
55 SNPs and all exonic regions of 8 genes (ATM, BRCA1, BRCA2, BRIP1, CHEK2, HOXB13, NBN, and PALB2)
Reagent kit
KAPA HiFi DNA Polymerase
2X Platinum Multiplex PCR Master Mix
Fragmentation
N/A
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Data use policy
NBDC data sharing policy (JGAP000001)