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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000571

Type of data
NGS (bulk RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
7.6 GB
File formats
  • FASTQ
Research
hum0147
Date published
2023-05-10
Date modified
2023-05-10
DDBJ Search
JGAD000571 (opens in a new tab)
JGA Study
JGAS000454 (opens in a new tab)

Analysis method

bulk RNA-seq

Materials and participants
Kidney cancer (ICD10: C64): 2 cases
T cells of peripheral blood mononuclear cells: 6 fractions each
tumor-infiltrating T cells: 4 fractions each
Lung cancer (ICD10: C34): 3 cases
tumor-infiltrating T cells: 2 fractions each
  • Health status
    Affected
  • Subject count
    3 (Individual)
Disease
Kidney cancer (C64)
Lung cancer (C34)
Sample description
RNAs extracted from T cell fractions of peripheral blood mononuclear cells and tumor-infiltrating T cell fractions
  • Tissue
    PBMC, Peripheral blood, TIL
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
KAPA Hyper Prep Kit
Fragmentation
KAPA Frag
Platform
Illumina HiSeq 2500
Illumina HiSeq 4000
Read type
Paired-end
Read length
100 bp
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)