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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000506

Type of data
NGS (WGS)
NGS (Exome)
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
670 GB
File formats
  • FASTQ
Research
hum0103
Date published
2022-01-14
Date modified
2022-01-14
DDBJ Search
JGAD000506 (opens in a new tab)
JGA Study
JGAS000389 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
biliary tract cancer (ICD10: C221, C240, C248, C23): 100 cases (KAPA: 44 cases, TruSeq: 73 cases, both protocols: 17 cases)
cancer tissues: 100 samples (KAPA: 44 samples, TruSeq: 73 samples)
normal gallbladder: 4 cases (collected from pancreatic cancer surgery cases)
non-cancer tissues: 4 samples
  • Health status
    Mixed
  • Subject count
    104 (Individual)
Disease
biliary tract cancer (C221, C240, C248, C23)
Sample description
RNAs extracted from cancer tissues from biliary tract cancer patients and non-cancer tissues from normal gallbladders
  • Tissue
    Gallbladder
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
KAPA RNA HyperPrep Kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
Heat treatment
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
101 bp
126 bp
Data use policy
NBDC data sharing policy (JGAP000001)