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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000502

Type of data
NGS (semibulk RNA-seq)
NGS (scRNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
272 GB
File formats
  • FASTQ
Research
hum0200
Date published
2022-08-23
Date modified
2022-08-25
DDBJ Search
JGAD000502 (opens in a new tab)
JGA Study
JGAS000387 (opens in a new tab)

Analysis method

semibulk RNA-seq

Materials and participants
DCIS (ICD10: D051): 1 case
tumor tissues: 2 libraries from 1 sample
IDC (ICD10: C509): 1 case
tumor tissues: 2 libraries from 1 sample
  • Health status
    Affected
  • Subject count
    2 (Individual)
Disease
IDC (C509)
DCIS (D051)
Sample description
Semibulks (cell clumps) prepared from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
Drop-seq
Fragmentation
Tagmentation with Nextera XT (Illumina)
Platform
Illumina HiSeq 3000
Illumina NovaSeq 6000
Read type
Paired-end
Read length
200 bp (100PE)
Data use policy
NBDC data sharing policy (JGAP000001)

scRNA-seq

Materials and participants
DCIS (ICD10: D051): 1 case
tumor tissues: 1 sample
non-tumor tissues: 1 sample
IDC (ICD10: C509): 1 case
tumor tissues: 1 sample
non-tumor tissues: 1 sample
  • Health status
    Affected
  • Subject count
    2 (Individual)
Disease
IDC (C509)
DCIS (D051)
Sample description
Single cells obtained from tumor and non-tumor tissues
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
scRNA-seq
Target
N/A
Reagent kit
Chromium Single Cell 3' v3
Fragmentation
Enzymatic fragmentation
Platform
Illumina HiSeq 3000
Read type
Paired-end
Read length
124 bp (26/98PE)
Data use policy
NBDC data sharing policy (JGAP000001)