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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000481

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
3.1 TB
File formats
  • FASTQ
Research
hum0300
Date published
2021-11-30
Date modified
2021-11-30
DDBJ Search
JGAD000481 (opens in a new tab)
JGA Study
JGAS000367 (opens in a new tab)

Analysis method

WES

Materials and participants
Esophageal squamous cell carcinoma (ICD10: C15): 88 cases
tumor and paired non-tumor tissue
  • Health status
    Affected
  • Subject count
    88 (Individual)
Disease
  • Esophageal squamous cell carcinoma
Sample description
DNAs extracted from tumor and non-tumor tissues
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina HiSeq 2000
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
Esophageal squamous cell carcinoma (ICD10: C15): 57 cases (56 cases are also used for Exome)
tumor and paired non-tumor tissue
  • Health status
    Affected
  • Subject count
    57 (Individual)
Disease
  • Esophageal squamous cell carcinoma
Sample description
RNAs extracted from tumor and non-tumor tissues
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
Ribo-Zero Gold Kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
TruSeq Stranded mRNA Sample Prep Kit
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)