We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.
- Release date
- 2021-11-30
- Date modified
- 2021-11-30
- Research
- hum0300
- Type of data
- NGS (Exome, RNA-seq)
- Access type
- Controlled-access (Type I)
- JGA Study
- JGAS000367
Analysis method
WES
- Materials and Participants
Esophageal squamous cell carcinoma (ICD10: C15): 88 cases tumor and paired non-tumor tissue
- Experimental Method
Exome
- Platform
Illumina [HiSeq 2000]
- Sample Description
DNAs extracted from tumor and non-tumor tissues
- Library Construction
SureSelect XT Human All Exon
- Fragmentation
Ultrasonic fragmentation (Covaris)
- Read Type
Paired-end
- Read Length
100 bp
- Japanese Genotype-phenotype Archive Dataset Accession
- Total Data Volume
6 TB (fastq)
- Policies
RNA-seq
- Materials and Participants
Esophageal squamous cell carcinoma (ICD10: C15): 57 cases (56 cases are also used for Exome) tumor and paired non-tumor tissue
- Experimental Method
RNA-seq
- Platform
Illumina [HiSeq 2500]
- Sample Description
RNAs extracted from tumor and non-tumor tissues
- Library Construction
Ribo-Zero Magnetic Gold Kit, TruSeq Stranded mRNA Sample Prep Kit
- Fragmentation
TruSeq Stranded mRNA Sample Prep Kit
- Read Type
Paired-end
- Read Length
100 bp
- Japanese Genotype-phenotype Archive Dataset Accession
- Total Data Volume
6 TB (fastq)
- Policies