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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Dataset ID

JGAD000480

Type of data
NGS (Amplicon-seq)
Access criteria
Controlled-access (Type I)
Total data volume
372 GB
File formats
  • FASTQ
Research
hum0303
Date published
2025-04-10
Date modified
2025-04-10
DDBJ Search
JGAD000480 (opens in a new tab)
JGA Study
JGAS000366 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0303_panel.pdf各種パネル情報と対象疾患と対象者数250 KB
hum0303_panel_e.pdfpanel information and number of subjects210 KB

Analysis method

Amplicon-seq

Materials and participants
17 types of malignant tumor: 108 cases
lung (ICD10: C349), ovary (ICD10: C56), bone (ICD10: C496), renal (ICD10: C64), brain (ICD10: C719), bladder (ICD10: C679), gastric (ICD10: C169), duodenal amupullar (ICD10: C241), pancreas (ICD10: C259), colon (ICD10: C20, C180, C187), esophageal (ICD10: C159), oral (ICD10: C049), tongue (ICD10: C029), middle pharynx (ICD10: C109), gingiva (ICD10: C031), liver (ICD10: C220)
tumor tissues and non-tumor tissues: 54 cases
tumor tissues only: 54 cases
  • Health status
    Affected
  • Subject count
    108 (Individual)
Disease
lung (C349)
ovary (C56)
bone (C496)
renal (C64)
brain (C719)
bladder (C679)
gastric (C169)
duodenal amupullar (C241)
pancreas (C259)
colon (C20, C180, C187)
esophageal (C159)
oral (C049)
tongue (C029)
middle pharynx (C109)
gingiva (C031)
liver (C220)
Sample description
DNAs extracted from tumor tissues and non-tumor tissues
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Amplicon-seq
Target
panel information and number of subjects
Reagent kit
Ion AmpliSeq Library Kit Plus
Fragmentation
PCR
Platform
Thermo Fisher Scientific Ion S5
Read type
Single-end
Read length
200 bp
Data use policy
NBDC data sharing policy (JGAP000001)