Dataset ID
JGAD000480
- Type of data
- NGS (Amplicon-seq)
- Access criteria
- Controlled-access (Type I)
- Total data volume
- 372 GB
- File formats
- FASTQ
- Research
- hum0303
- Date published
- 2025-04-10
- Date modified
- 2025-04-10
- DDBJ Search
- JGAD000480 (opens in a new tab)
- JGA Study
- JGAS000366 (opens in a new tab)
Unrestricted-access files linked to this dataset
| File | Label | Size | Copy URL |
|---|---|---|---|
| hum0303_ | 各種パネル情報と対象疾患と対象者数 | 250 KB | |
| hum0303_ | panel information and number of subjects | 210 KB |
Analysis method
Amplicon-seq
- Materials and participants
- 17 types of malignant tumor: 108 cases
lung (ICD10: C349), ovary (ICD10: C56), bone (ICD10: C496), renal (ICD10: C64), brain (ICD10: C719), bladder (ICD10: C679), gastric (ICD10: C169), duodenal amupullar (ICD10: C241), pancreas (ICD10: C259), colon (ICD10: C20, C180, C187), esophageal (ICD10: C159), oral (ICD10: C049), tongue (ICD10: C029), middle pharynx (ICD10: C109), gingiva (ICD10: C031), liver (ICD10: C220)
tumor tissues and non-tumor tissues: 54 cases
tumor tissues only: 54 cases - Health statusAffected
- Subject count108 (Individual)
- Disease
- lung
- ovary
- bone
- renal
- brain
- bladder
- gastric
- duodenal amupullar
- pancreas
- colon
- esophageal
- oral
- tongue
- middle pharynx
- gingiva
- liver
- Sample description
- DNAs extracted from tumor tissues and non-tumor tissues
- Tumor / normalMixed
- Sample provider
- N/A
- Experimental method
- Amplicon-seq
- Reagent kit
- Ion AmpliSeq Library Kit Plus
- Fragmentation
- PCR
- Platform
- Thermo Fisher Scientific Ion S5
- Read type
- Single-end
- Read length
- 200 bp
- Data use policy
- NBDC data sharing policy (JGAP000001)