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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000463

Type of data
NGS (RNA-seq: PromethION)
NGS (RNA-seq: NovaSeq 6000)
NGS (WGS: PromethION)
Access criteria
Controlled-access (Type I)
Total data volume
2.3 TB
File formats
  • FASTQ
Research
hum0068
Date published
2021-12-01
Date modified
2022-03-17
DDBJ Search
JGAD000463 (opens in a new tab)
JGA Study
JGAS000349 (opens in a new tab)

Analysis method

WGS

Materials and participants
lung adenocarcinoma (ICD10: C349): 21 + 42 cases (41 + 8 + 81 samples)
tumor tissues: 21 + 4 + 42 samples
normal tissues: 20 + 4 + 39 samples
  • Health status
    Affected
  • Subject count
    63 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
DNAs extracted from tumor and normal tissues of lung adenocarcinomas
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
Ligation Sequencing Kit (SQK-LSK109)
Fragmentation
N/A
Platform
Oxford Nanopore Technologies PromethION
Read type
Single-end
Read length
N/A
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
lung adenocarcinoma (ICD10: C349): 6 cases (12 samples)
tumor tissues: 6 samples
normal tissues: 6 samples
  • Health status
    Affected
  • Subject count
    6 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
RNAs extracted from tumor and normal tissues of lung adenocarcinomas
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
Ligation Sequencing Kit (SQK-LSK109)
SMART-Seq v4 Ultra Low Input RNA Kit
Fragmentation
N/A
Platform
Oxford Nanopore Technologies PromethION
Read type
Single-end
Read length
850 bp (Mean)
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
lung adenocarcinoma (ICD10: C349): 6 + 5 + 26 cases (12 + 5 + 26 samples)
tumor tissues: 6 + 5 + 26 samples
normal tissues: 6 samples
  • Health status
    Affected
  • Subject count
    37 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
RNAs extracted from tumor and normal tissues of lung adenocarcinomas
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
Nextera XT DNA Library Prep Kit
SMART-Seq Stranded Kit
SMART-Seq v4 Ultra Low Input RNA Kit
TruSeq Stranded mRNA Library Prep Kit
TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold
Fragmentation
Tagmentation (Nextera XT DNA Library Preparation Kit)
Platform
Illumina HiSeq 2000
Illumina NovaSeq 6000
Read type
Paired-end
Read length
300 bp
Data use policy
NBDC data sharing policy (JGAP000001)

scDNA-seq

Materials and participants
lung adenocarcinoma (ICD10: C349): 2 cases
tumor tissues: 2 samples
  • Health status
    Affected
  • Subject count
    2 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
DNAs extracted from single cells in tumor tissues of lung adenocarcinomas
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
scDNA-seq
Target
N/A
Reagent kit
Chromium Single Cell DNA Reagent Kit
Fragmentation
N/A
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
300 bp
Data use policy
NBDC data sharing policy (JGAP000001)