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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000429

Type of data
NGS (CAGE-seq)
Access criteria
Controlled-access (Type I)
Total data volume
32.0 GB
File formats
  • FASTQ
Research
hum0113
Date published
2022-08-02
Date modified
2022-08-02
DDBJ Search
JGAD000429 (opens in a new tab)
JGA Study
JGAS000318 (opens in a new tab)

Analysis method

CAGE-seq

Materials and participants
PD patients (ICD10: G20) and non-PD (healthy) controls
- Whole blood: 39 PD patients and 20 non-PD controls
- iPS-derived neurons and NSCs: 2 PD patients (3 samples) with PARK2 mutations and 3 non-PD controls
  • Health status
    Mixed
  • Subject count
    64 (Individual)
Disease
PD patients (G20)
PD patients with PARK2 mutations (G20)
Sample description
RNA extracted from whole blood, iPS-derived neurons, and iPS-derived NSCs
iPS-derived neurons and NSCs
  • Tissue
    iPSC-derived neuron, iPSC-derived NSC, Peripheral blood
  • Tumor / normal
    Normal
Cell line
iPSC-derived neuron
iPSC-derived NSC
Sample provider
N/A
Experimental method
CAGE-seq
Target
N/A
Reagent kit
nAnT-iCAGE
Fragmentation
N/A
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
47–50 bp
Data use policy
NBDC data sharing policy (JGAP000001)