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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000400

Type of data
target sequencing of 23 genes related to clonal hematopoiesis and SNP array in 11,234 subjects extracted from approximately 200,000 subjects registered in Biobank Japan between fiscal years 2003 to 2007
Access criteria
Controlled-access (Type I)
Total data volume
687 KB
File formats
  • CSV
Research
hum0014
Date published
2021-05-21
Date modified
2022-12-20
DDBJ Search
JGAD000400 (opens in a new tab)
JGA Study
JGAS000293 (opens in a new tab)

Analysis method

Genotyping by array

Materials and participants
11,234 subjects extracted from approximately 200,000 subjects registered in Biobank Japan between fiscal years 2003 to 2007
  • Subject count
    11,234 (Individual)
  • Cohort
    BioBank Japan
  • Population
    Japanese
Sample description
DNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
QC and filtering
SNPs examined in all of the three versions of array
Analysis method
GenCall software (GenomeStudio)
Variant count
515,355
Processed data type
Somatic CNV
Data use policy
NBDC data sharing policy (JGAP000001)