Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000390

Type of data
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
206 GB
File formats
  • FASTQ
Research
hum0267
Date published
2025-02-17
Date modified
2025-02-17
DDBJ Search
JGAD000390 (opens in a new tab)
JGA Study
JGAS000284 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
47 children who suspected of sarcoma (ICD10)
Rhabdomyosarcoma (C499): 19, Ewing sarcoma (C419): 8, Undifferentiated sarcoma (C499): 5, Malignant rhabdoid tumor (C809): 3, Myxopapillary ependymoma (C719): 2, Clear cell sarcoma of the kidney (C64), Fetal rhabdomyomatous Nephroblastoma (C64), Inflammatory myofibroblastic tumor (-), Langerhans cell histiocytosis (C966), Liposarcoma (C499), Malignant peripheral nerve sheath tumor (C479), Neuroblastoma (C749), NUT carcinoma (C80.9), Subcutaneous panniculitis-like T-cell lymphoma (C863), Synovial sarcoma (C499): 1 case each
  • Health status
    Affected
  • Subject count
    47 (Individual)
  • Age group
    Child
Disease
  • Rhabdomyosarcoma
  • Ewing sarcoma
  • Undifferentiated sarcoma
  • Malignant rhabdoid tumor
  • Myxopapillary ependymoma
  • Clear cell sarcoma of the kidney
  • Fetal rhabdomyomatous Nephroblastoma
  • Langerhans cell histiocytosis
  • Liposarcoma
  • Malignant peripheral nerve sheath tumor
  • Neuroblastoma
  • NUT carcinoma
  • Subcutaneous panniculitis-like T-cell lymphoma
  • Synovial sarcoma
Sample description
RNAs extracted from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra RNA Library Prep Kit for Illumina
Fragmentation
Enzymatic fragmentation
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
75 bp
Data use policy
NBDC data sharing policy (JGAP000001)