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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000356

Type of data
NGS (RNA-seq, CAGE-seq)
Access criteria
Controlled-access (Type I)
Total data volume
164 GB
File formats
  • FASTQ
  • BED
Research
hum0243
Date published
2020-11-25
Date modified
2021-03-09
DDBJ Search
JGAD000356 (opens in a new tab)
JGA Study
JGAS000253 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
Acute Myeloid Leukemia (ICD10: C920): 114 cases (166 samples)
Cells derived from cord blood: 44 samples
  • Health status
    Mixed
  • Subject count
    138 (Mixed)
Disease
Acute Myeloid Leukemia (C920)
Sample description
RNAs extracted from cells derived from cord blood, and leukemia cells harvested from bone marrow aspirates or spleen cells of humanized mice generated from peripheral blood, bone marrow aspirates or samples from patients with Acute Myeloid Leukemia
  • Tissue
    Bone marrow, Cord blood, Peripheral blood, Spleen
  • Tumor / normal
    Mixed
Sample provider
https://www.bs.jrc.or.jp/ktks/bbc/special/m6_03_00_index.html
https://www.chubu-cbb.org
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra DNA Library Prep Kit for Illumina
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina HiSeq 2500
Read type
Single-end
Read length
50 bp
Reference genome
GRCh38
Data use policy
NBDC data sharing policy (JGAP000001)

CAGE-seq

Materials and participants
Acute Myeloid Leukemia (ICD10: C920): 27 cases (27 samples, 25 are also used in RNA-seq analysis)
  • Health status
    Affected
  • Subject count
    27 (Individual)
Disease
Acute Myeloid Leukemia (C920)
Sample description
RNAs extracted from leukemia cells harvested from bone marrow aspirates or spleen cells of humanized mice generated from peripheral blood, bone marrow aspirates or samples from patients with Acute Myeloid Leukemia
  • Tissue
    Bone marrow, Peripheral blood, Spleen
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
CAGE-seq
Target
N/A
Reagent kit
Low Quantity ssCage
Fragmentation
N/A
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
47 bp
Reference genome
GRCh38
Data use policy
NBDC data sharing policy (JGAP000001)