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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000346

Type of data
NGS (RNA-seq) for high-risk neuroblastoma
NGS (Target Capture) for high-risk neuroblastoma
Access criteria
Controlled-access (Type I)
Total data volume
309 GB
File formats
  • FASTQ
  • BAM
  • TXT
Research
hum0035
Date published
2020-12-21
Date modified
2022-02-16
DDBJ Search
JGAD000346 (opens in a new tab)
JGA Study
JGAS000246 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
380genesregions.xlsxlist of 380 genes & regions13.4 KB

Analysis method

RNA-seq

Materials and participants
30 high-risk neuroblastoma patients (ICD10: C749)
  • Health status
    Affected
  • Subject count
    30 (Individual)
  • Age group
    Child
Disease
high-risk neuroblastoma patients (C749)
Sample description
RNAs extracted from tumor tissues of pancreatoblastoma, hepatoblastoma, pediatric germ cell tumors and neuroblastoma, and HBL cell lines
  • Tumor / normal
    Tumor
Cell line
Hepatoblastoma cell line
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra RNA Library Prep Kit for Illumina
TruSeq RNA Library Prep Kit
Fragmentation
included in the above library construction kit
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
108 bp
Reference genome
GRCh37
Data use policy
NBDC data sharing policy (JGAP000001)

Targeted DNA sequencing

Materials and participants
30 high-risk neuroblastoma patients (ICD10: C749)
  • Health status
    Affected
  • Subject count
    30 (Individual)
  • Age group
    Child
Disease
high-risk neuroblastoma patients (C749)
Sample description
DNAs extracted from tumor tissues of hepatoblastoma, pediatric germ cell tumors and neuroblastoma, and HBL cell lines
  • Tumor / normal
    Tumor
Cell line
Hepatoblastoma cell line
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
380 genes or regions associated with paediatric cancers
(list of 380 genes & regions)
Reagent kit
NEBNext Ultra DNA Library Prep Kit for Illumina
Fragmentation
Ultrasonic fragmentation (Covaris E220)
Platform
Illumina HiSeq 2000
Illumina MiSeq
Read type
Paired-end
Read length
100 bp
150 bp
Reference genome
GRCh37
Data use policy
NBDC data sharing policy (JGAP000001)