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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000336

Type of data
NGS (WGS, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
196 GB
File formats
  • FASTQ
Research
hum0201
Date published
2020-11-20
Date modified
2020-11-20
DDBJ Search
JGAD000336 (opens in a new tab)
JGA Study
JGAS000237 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
Neoplastic disease: 23 + 4 cases (35+ 5 samples)
Small cell lung cancer (ICD10: C34)
Biliary tract cancer (ICD10: C23, C24, C78)
Colon cancer (ICD10: C18-20)
Duodenal cancer (ICD10: C17)
Esophageal cancer (ICD10: C15)
Stomach cancer (ICD10: C16, C78)
Liver cancer (ICD10: C22)
Pancreatic cancer (ICD10: C25)
  • Health status
    Mixed
  • Subject count
    40 (Sample)
Disease
  • Small cell lung cancer
  • Biliary tract cancer
  • Colon cancer
  • Duodenal cancer
  • Esophageal cancer
  • Stomach cancer
  • Liver cancer
  • Pancreatic cancer
Sample description
RNAs extracted from organoids established from tumor tissues and a normal epithelial tissue of the patients
RNAs extracted from organoids with BET bromodomain inhibitor established from tumor tissues and a normal epithelial tissue of colon cancer patients
  • Tissue
    Colon, Organoid
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq RNA Library Prep Kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
Heat treatment
Platform
Illumina HiSeq 2500
Illumina HiSeq X
Illumina NovaSeq 6000
Read type
Paired-end
Read length
250 bp
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)