Dataset ID
JGAD000331
- Type of data
- NGS (Exome, RNA-seq)
- Access criteria
- Controlled-access (Type I)
- Total data volume
- 367 GB
- File formats
- FASTQ
- Research
- hum0195
- Date published
- 2021-04-02
- Date modified
- 2021-04-02
- DDBJ Search
- JGAD000331 (opens in a new tab)
- JGA Study
- JGAS000234 (opens in a new tab)
Analysis method
WES
- Materials and participants
- liver cirrhosis and hepatocellular carcinoma after hepatitis C virus eradication (ICD10: K746, C220): 12 cases
tumor tissues: 12 samples
lymphocytes isolated from peripheral blood: 12 samples - Health statusAffected
- Subject count12 (Individual)
- Disease
- liver cirrhosis and hepatocellular carcinoma after hepatitis C virus eradication
- Sample description
- DNAs extracted from tumor tissues and lymphocytes isolated from peripheral blood of hepatocellular carcinoma
DNAs extracted from tumor tissues, non-tumor tissues, and peripheral blood samples of gastric cancer and gastric submucosal tumor - TissueLymphocyte, Peripheral blood
- Tumor / normalMixed
- Sample provider
- N/A
- Experimental method
- WES
- Target
- N/A
- Reagent kit
- Ion AmpliSeq Exome RDY Kit
- Fragmentation
- Enzymatic Fragmentation
- Platform
- Thermo Fisher Scientific Ion Proton
- Read type
- Single-end
- Read length
- 150 bp
- Data use policy
- NBDC data sharing policy (JGAP000001)