Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000316

Type of data
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
15.8 GB
File formats
  • FASTQ
  • TXT
Research
hum0221
Date published
2023-07-31
Date modified
2023-07-31
DDBJ Search
JGAD000316 (opens in a new tab)
JGA Study
JGAS000225 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
3 iPS cell lines established from 2 Fabry disease patients (ICD10: E752)
  • Health status
    Affected
  • Subject count
    3 (Sample)
Disease
Fabry disease (E752)
Sample description
RNAs extracted from iPS cells derived from patients' peripheral blood cells
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
According to TruSeq Stranded mRNA Sample Preparation Guide
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
101 bp
Reference genome
GRCh38
Mapping
STAR (version 2.7.1a)
Analysis method
RSEM (version 1.2.31), annotation: Ensembl ver. 98
Read count
Total reads: 35447368.83 (mean) / Uniquely mapped reads: 33238808.83 (mean)
Processed data type
TPM
Data use policy
NBDC data sharing policy (JGAP000001)