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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000287

Type of data
NGS (Exome)
single-cell CNV analysis
Access criteria
Controlled-access (Type I)
Total data volume
832 GB
File formats
  • FASTQ
  • BAM
Research
hum0200
Date published
2021-04-02
Date modified
2025-10-27
DDBJ Search
JGAD000287 (opens in a new tab)
JGA Study
JGAS000202 (opens in a new tab)

Analysis method

WES

Materials and participants
DCIS (ICD10: D051): 24 cases
tumor tissues: 28 samples
non-tumor tissues: 24 samples
  • Health status
    Affected
  • Subject count
    24 (Individual)
Disease
DCIS (D051)
Sample description
DNAs extracted from tumor and non-tumor tissues
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V7
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina HiSeq 3000
Read type
Paired-end
Read length
200 bp
Data use policy
NBDC data sharing policy (JGAP000001)

Single-cell CNV

Materials and participants
DCIS (ICD10: D051): 3 cases
tumor tissues: 3 samples
  • Health status
    Affected
  • Subject count
    3 (Individual)
Disease
DCIS (D051)
Sample description
single-cells from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
scDNA-seq
Target
N/A
Reagent kit
Chromium Single Cell DNA Reagent Kit
Platform
10x Genomics Chromium
Reference genome
GRCh38
QC and filtering
cellranger-dna-1.1.0
Analysis method
cellranger-dna-1.1.0 (refdata-GRCh38-1.0.0.)
Variant count
N/A
Data use policy
NBDC data sharing policy (JGAP000001)