Dataset ID
JGAD000279
- Type of data
- NGS (Target Capture)
- Access criteria
- Controlled-access (Type I)
- Total data volume
- 476 GB
- File formats
- FASTQ
- Research
- hum0192
- Date published
- 2021-04-23
- Date modified
- 2021-04-23
- DDBJ Search
- JGAD000279 (opens in a new tab)
- JGA Study
- JGAS000196 (opens in a new tab)
Analysis method
Targeted DNA sequencing
- Materials and participants
- Colon cancer (ICD10: C18.9, C20): 20 cases
- Health statusAffected
- Subject count20 (Individual)
- Disease
- Colon cancer (C189, C20)
- Sample description
- cell free DNA extracted from plasma of peripheral blood
- TissuePlasma
- Tumor / normalNormal
- Sample provider
- N/A
- Experimental method
- Targeted DNA sequencing
- Target
- NCC Oncopanel v2
https://www.ncc.go.jp/en/information/press_release/20190717/20190717152024.html - Reagent kit
- SureSelect XT HS
- Fragmentation
- N/A
- Platform
- Illumina NovaSeq 6000
- Read type
- Paired-end
- Read length
- 300 bp
- Data use policy
- NBDC data sharing policy (JGAP000001)