Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000260

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
103 GB
File formats
  • FASTQ
  • BAM
Research
hum0188
Date published
2020-09-28
Date modified
2020-11-18
DDBJ Search
JGAD000260 (opens in a new tab)
JGA Study
JGAS000179 (opens in a new tab)

Analysis method

WES

Materials and participants
Gastric cancer cell lines: OCUM-8 and OCUM-9
  • Health status
    Affected
  • Subject count
    2 (Sample)
  • Population
    Japanese
Sample description
DNAs extracted from Japanese gastric cancer cell lines
  • Tumor / normal
    Tumor
Cell line
OCUM-8
OCUM-9
Sample provider
Cell lines were provided by Dr. Masakazu Yashiro at Osaka City University
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V5
Fragmentation
SureSelect Human All Exon V5
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
103 bp
104 bp
Reference genome
GRCh38
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
Gastric cancer cell lines: OCUM-8 and OCUM-9
  • Health status
    Affected
  • Subject count
    2 (Sample)
  • Population
    Japanese
Sample description
RNAs extracted from Japanese gastric cancer cell lines
  • Tumor / normal
    Tumor
Cell line
OCUM-8
OCUM-9
Sample provider
Cell lines were provided by Dr. Masakazu Yashiro at Osaka City University
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra Directional RNA Library Prep Kit for Illumina
Fragmentation
Heat treatment
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
103 bp
Reference genome
GRCh38
Data use policy
NBDC data sharing policy (JGAP000001)