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- Release date
- 2020-09-28
- Date modified
- 2020-09-28
- Research
- hum0176
- Type of data
- NGS (Exome, Target Capture)
- Access type
- Controlled-access (Type I)
- JGA Study
- JGAS000172
Analysis method
WES
- Materials and Participants
Uterine carcinosarcoma (ICD10: C549): 1 case (2 samples) Ovarian carcinosarcoma (ICD10: C56): 3 case (6 samples)
- Experimental Method
Exome
- Platform
Illumina [HiSeq 2000]
- Sample Description
DNAs extracted from tumor and paired non-tumor tissues
- Library Construction
SureSelect Human All Exon V4 or V5
- Fragmentation
Ultrasonic fragmentation (Covaris)
- Read Type
Paired-end
- Read Length
101 bp
- Japanese Genotype-phenotype Archive Dataset Accession
JGAD000250
- Total Data Volume
646 GB (fastq)
- Policies
NBDC policy
Targeted DNA sequencing (CS-A/CS-B panels)
- Materials and Participants
Uterine carcinosarcoma (ICD10: C549): 91 case (182 samples) Ovarian carcinosarcoma (ICD10: C56): 14 case (28 samples)
- Experimental Method
Target Capture (CS-A, CS-B)
- Targets
CS-A: 491 genes, 2.605 Mbps CS-B: 114 genes, 422.9 kbps
- Platform
Illumina [HiSeq 2000]
- Sample Description
DNAs extracted from tumor and paired non-tumor tissues
- Library Construction
SureSelect XT Custom
- Fragmentation
Ultrasonic fragmentation (Covaris)
- Read Type
Paired-end
- Read Length
101 bp
- Japanese Genotype-phenotype Archive Dataset Accession
JGAD000250
- Total Data Volume
646 GB (fastq)
- Policies
NBDC policy