Dataset ID
JGAD000226
- Type of data
- NGS (Exome, Target Capture, RNA-seq)
- Access criteria
- Controlled-access (Type I)
- Total data volume
- 186 GB
- File formats
- FASTQ
- BAM
- Research
- hum0130
- Date published
- 2020-09-28
- Date modified
- 2024-06-17
- DDBJ Search
- JGAD000226 (opens in a new tab)
- JGA Study
- JGAS000150 (opens in a new tab)
Analysis method
WES
- Materials and participants
- POEMS syndrome (ICD10: C90.2): 15 cases
- Health statusAffected
- Subject count15 (Individual)
- Disease
- POEMS syndrome (C902)
- Sample description
- DNA purified from Plasma cells or buccal cell of POEMS syndrome, MM, MGUS
- TissueBone marrow, Buccal mucosa, Plasma cell
- Tumor / normalMixed
- Sample provider
- N/A
- Experimental method
- WES
- Target
- Coding exons
- Reagent kit
- SureSelect Human All Exon V5
- Fragmentation
- Ultrasonic fragmentation
- Platform
- Illumina HiSeq 2500
- Read type
- Paired-end
- Read length
- 121 bp
- Reference genome
- GRCh37
- Data use policy
- NBDC data sharing policy (JGAP000001)
Targeted DNA sequencing
- Materials and participants
- POEMS syndrome (ICD10: C90.2): 20 cases
- Health statusAffected
- Subject count20 (Individual)
- Disease
- POEMS syndrome (C902)
- Sample description
- DNA purified from Plasma cells or buccal cell of POEMS syndrome, MM, MGUS
- TissueBone marrow, Buccal mucosa, Plasma cell
- Tumor / normalMixed
- Sample provider
- N/A
- Experimental method
- Targeted DNA sequencing
- Target
- Coding exons
- Reagent kit
- SureSelect Custom
- Fragmentation
- Ultrasonic fragmentation
- Platform
- Illumina MiSeq
- Read type
- Paired-end
- Read length
- 273 bp
- Reference genome
- GRCh37
- Data use policy
- NBDC data sharing policy (JGAP000001)
RNA-seq
- Materials and participants
- POEMS syndrome (ICD10: C90.2): 5 cases
MM (ICD10: C90.0): 4 cases
MGUS (ICD10: D47.2): 5 cases
Normal control (lymphoma without BM invasion): 3 cases - Health statusAffected
- Subject count17 (Individual)
- Disease
- POEMS syndrome (C902)
MM (C900)
MGUS (D472) - Sample description
- RNA purified from Plasma cells or buccal cell of POEMS syndrome, MM, MGUS and normal controls
- TissueBone marrow, Plasma cell
- Tumor / normalTumor
- Sample provider
- N/A
- Experimental method
- RNA-seq
- Target
- N/A
- Reagent kit
- NEBNext Ultra DNA Library Prep Kit for Illumina
SMART-Seq v4 Ultra Low Input RNA Kit - Fragmentation
- Ultrasonic fragmentation
- Platform
- Illumina HiSeq 1500
- Read type
- Single-end
- Read length
- 60 bp
- Data use policy
- NBDC data sharing policy (JGAP000001)