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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000217

Type of data
gliomas
NGS (Exome, RNA-seq), Methylation array
Access criteria
Controlled-access (Type I)
Total data volume
418 MB
File formats
  • TXT
Research
hum0006
Date published
2020-09-28
Date modified
2020-11-18
DDBJ Search
JGAD000217 (opens in a new tab)
JGA Study
JGAS000146 (opens in a new tab)

Analysis method

メチル化アレイ

Materials and participants
oligodendroglioma (ICD10: C71): 16 cases (30 samples)
diffuse cerebellar glioma (ICD10: C71): 17 cases (17 samples)
thalamic glioma (ICD10: C71): 14 cases (14 samples)
glioma (ICD10: C71): 93 cases (113 samples)
20 pairs of primary-recurrent gliomas, 69 primary gliomas, and 4 recurrent gliomas
gliomas including primary grade II/III tumors and their recurrent tumors; 113 samples
  • Health status
    Affected
  • Subject count
    93 (Individual)
Disease
oligodendroglioma (C71)
diffuse cerebellar glioma (C71)
thalamic glioma (C71)
glioma (C71)
Sample description
DNAs extracted from surgical specimen of brain tumors (primary and matched recurrent samples) and paired normal peripheral blood cells.
  • Tissue
    Brain, Peripheral blood
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Methylation array
Target
N/A
Reagent kit
Infinium HumanMethylation450 BeadChip Kit
Platform
Illumina Infinium HumanMethylation450
QC and filtering
HumanMethylation450_15017482_v1.1 (bpm)
Analysis method
Genome Studio v2010.3
Probe count
485,577 (methylation sites)
Processed data type
DNA methylation data
Data use policy
NBDC data sharing policy (JGAP000001)