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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000208

Type of data
NGS (scRNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
48.1 GB
File formats
  • FASTQ
Research
hum0106
Date published
2021-10-27
Date modified
2021-10-27
DDBJ Search
JGAD000208 (opens in a new tab)
JGA Study
JGAS000139 (opens in a new tab)

Analysis method

scRNA-seq

Materials and participants
CRC (ICD10: C18) patients
5 tumor tissues derived from 2 CRC patients (HCT24, HCT25)
(2 cells from HCT24 and 3 cells from HCT25)
non-tumor tissues derived from 1 CRC patient (HCT71)
  • Health status
    Affected
  • Subject count
    6 (Sample)
Disease
CRC (C18)
Sample description
RNAs extracted from single cells of culture tissues derived from CRC patients
  • Tumor / normal
    Mixed
Cell line
Patient-derived cell line
Sample provider
N/A
Experimental method
scRNA-seq
Target
N/A
Reagent kit
Chromium Single Cell 3' v1
Fragmentation
Enzymatic fragmentation
Platform
Illumina HiSeq 2500
Read type
Single-end
Read length
Read1(transcript): 50 bp
Read2(UMI): 15 bp
Index1(CellBarcode): 14 bp
Index2(Sample Index): 8 bp
Data use policy
NBDC data sharing policy (JGAP000001)