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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000142

Type of data
NGS (ChIP-seq)
Access criteria
Controlled-access (Type I)
Total data volume
10.7 GB
File formats
  • FASTQ
  • bigWig
Research
hum0129
Date published
2020-09-28
Date modified
2020-11-18
DDBJ Search
JGAD000142 (opens in a new tab)
JGA Study
JGAS000131 (opens in a new tab)

Analysis method

ChIP-seq

Materials and participants
CHARGE syndrome patient (ICD10: Q878): 3 cases
(2 samples each, total 4 samples)
  • Health status
    Affected
  • Subject count
    2 (Individual)
Disease
CHARGE syndrome patient (Q878)
Sample description
DNAs extracted from long-term self-renewing neuroepithelial-like stem cells induced from iPS cells established from skin fibroblasts of CHARGE syndrome patients
anti-histone antibody (H3K27ac) was used for immunoprecipitation
  • Tissue
    Dermal fibroblast, Neuroepithelial cell
  • Tumor / normal
    Normal
Cell line
iPSC
Sample provider
N/A
Experimental method
ChIP-seq
Target
N/A
Reagent kit
KAPA Hyper Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris S2)
Platform
Illumina HiSeq 2500
Read type
Single-end
Read length
50 bp
Reference genome
GRCh37
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)