Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000130

Type of data
Genotypes for genome wide SNPs on the Affymetrix Genome-Wide Human SNP Array 6.0
Access criteria
Controlled-access (Type I)
Total data volume
42.2 GB
File formats
  • CEL
  • CHP
Research
hum0082
Date published
2020-09-28
Date modified
2020-11-18
DDBJ Search
JGAD000130 (opens in a new tab)
JGA Study
JGAS000120 (opens in a new tab)

Analysis method

Genotyping by array

Materials and participants
418 healthy Japanese
  • Health status
    Healthy
  • Subject count
    418 (Individual)
  • Population
    Japanese
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
Genome-Wide Human SNP Array 6.0 Kit
Platform
Affymetrix Genome-Wide Human SNP Array 6.0
Reference genome
GRCh37
QC and filtering
overall call rate < 0.97, SNP call rate < 0.95, HWE P < 0.001, MAF < 0.01
Analysis method
Birdseed version 2
Variant count
647,318 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)