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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000104

Type of data
NGS (RNA-seq)
NGS (Amplicon-seq)
Access criteria
Controlled-access (Type I)
Total data volume
69.0 GB
File formats
  • FASTQ
Research
hum0111
Date published
2020-09-28
Date modified
2020-09-28
DDBJ Search
JGAD000104 (opens in a new tab)
JGA Study
JGAS000103 (opens in a new tab)

Analysis method

RNA Amplicon-seq

Materials and participants
diffuse-type gastric carcinoma (ICD10: C16): 30 cases
(matched tumor and normal tissues)
  • Health status
    Mixed
  • Subject count
    30 (Individual)
Disease
  • diffuse-type gastric carcinoma
Sample description
RNAs extracted from cancer and normal tissues from gastric carcinoma patients
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Amplicon-seq
Target
V region to C region of TCRα, TCRβ, IgVH and IgVκ/λ genes
Fragmentation
N/A
Platform
Illumina MiSeq
Read type
Paired-end
Read length
300 bp
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)