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Dataset ID

JGAD000086

Type of data: NGS (Exome)
Access criteria: Controlled-access (Type I)
Total data volume: 5.7 TB
File formats: FASTQ
Research: hum0133
Date published: 2020-09-28
Date modified: 2020-11-18
DDBJ Search: JGAD000086 (opens in a new tab)
JGA Study: JGAS000086 (opens in a new tab)

Analysis method

WES

Materials and participants: gastric cancer: 75 cases (Total: 214 samples)
non-tumor tissue: 75 samples
tumor tissue (metastasis/recurrence): 139 samples; Health status
Affected
Subject count
75 (Individual)
Sample description: DNAs extracted from tumor and non-tumor tissues from 75 gastric cancer patients; Tumor / normal
Mixed
Sample provider: N/A
Experimental method: WES
Target: N/A
Reagent kit: SureSelect Human All Exon V4
SureSelect Human All Exon V5 + lincRNA
Fragmentation: Ultrasonic fragmentation (Covaris E220)
Platform: Illumina HiSeq 2000
Read type: Paired-end
Read length: 100 bp
Data use policy: NBDC data sharing policy (JGAP000001)