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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000065

Type of data
NGS (PCR amplicon Seq)
Access criteria
Controlled-access (Type I)
Total data volume
933 MB
File formats
  • FASTQ
Research
hum0068
Date published
2020-09-28
Date modified
2024-10-17
DDBJ Search
JGAD000065 (opens in a new tab)
JGA Study
JGAS000065 (opens in a new tab)

Analysis method

RNA Amplicon-seq

Materials and participants
lung adenocarcinoma (ICD10: C349): 8 cases (7 samples)
  • Health status
    Affected
  • Subject count
    8 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
cDNA were synthesized from mRNA extracted from lung adenocarcinomas
  • Tissue
    Lung
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Amplicon-seq
Target
sample 1: Amplicons from EML4-ALK positive case (EML4-ALK region) and KIF5B-RET positive case (KIF5B-RET region) were mixed (1 sample)
sample 2 - 7: Amplicons from 6 cases (EGFR and KRAS regions)
Reagent kit
Nanopore Sequencing Kit
Fragmentation
PCR
Platform
Oxford Nanopore Technologies MinION
Read type
Single-end
Read length
N/A
Data use policy
NBDC data sharing policy (JGAP000001)