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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000052

Type of data
NGS (Exome, Target Capture)
Access criteria
Controlled-access (Type I)
Total data volume
2.8 TB
File formats
  • FASTQ
Research
hum0041
Date published
2020-09-28
Date modified
2020-11-18
DDBJ Search
JGAD000052 (opens in a new tab)
JGA Study
JGAS000052 (opens in a new tab)

Analysis method

WES + Targeted DNA sequencing

Materials and participants
33 cancerous and non-cancerous tissues of primary HCC
・Recurrence patterns in accordance without Milan criteria : 16 cases
・Recurrence patterns in accordance with Milan criteria : 17 cases
  • Health status
    Affected
  • Subject count
    33 (Individual)
Sample description
gDNA extracted from cancerous and non-cancerous tissues
(Phenol-chloroform extraction)
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Targeted DNA sequencing
WES
Target
SureSelect Human All Exon V4, HBVgemone, lincRNA
Reagent kit
SureSelect Human All Exon V4
Fragmentation
Covaris S220
Platform
Illumina HiSeq 2000
Read type
Paired-end
Read length
100 bp
Reference genome
GRCh37
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)