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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

E-GEAD-887

Type of data
Integrated single-cell object data of PBMCs from 25 NMOSD patients
Access criteria
Unrestricted-access
Total data volume
1.5 GB
File formats
  • TXT
  • RDS
Research
hum0197
Date published
2024-12-04
Date modified
2024-12-04
DDBJ Search
E-GEAD-887 (opens in a new tab)

Analysis method

scRNA-seq

Materials and participants
NMOSD (ICD10: G36.0): 25 cases
  • Health status
    Affected
  • Subject count
    25 (Individual)
Disease
NMOSD (G360)
Sample description
RNAs extracted from PBMC
  • Tissue
    PBMC, Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
scRNA-seq
Target
N/A
Reagent kit
Chromium Next GEM Chip G Single Cell Kit
Chromium Next GEM Single Cell 5' v1.1
Single Index Kit T Set A
Fragmentation
Enzymatic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
90 bp
Reference genome
GRCh38
Mapping
Cell Ranger 6.0.0
QC and filtering
GRCh38
Analysis method
Cell Ranger 6.0.0
Gene count
26,135 (features)
Data use policy
NBDC data sharing policy (JGAP000001)