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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

E-GEAD-883

Type of data
NGS (RNA-seq)
Access criteria
Unrestricted-access
Total data volume
2.0 MB
File formats
  • TXT
  • CSV
Research
hum0442
Date published
2024-12-06
Date modified
2024-12-06
DDBJ Search
E-GEAD-883 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
advanced or recurrent non-small cell lung cancer (ICD10: C349) before administering anti-PD-1/PD-L1 antibody treatment: 20 cases
FFPE tumor tissue: 20 samples
  • Health status
    Affected
  • Subject count
    20 (Individual)
Disease
advanced or recurrent non-small cell lung cancer (C349)
Sample description
RNAs extracted from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
Nextera XT DNA Library Prep Kit
SMART-Seq Stranded Kit
Fragmentation
Nextera XT DNA Library Prep Kit
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
GRCh38
Mapping
The count data was mapped to the reference genome using STAR aligner for calculation.
QC and filtering
Read count and TPM data calculated after adapter trimming of fastq files.
Analysis method
HTSeq
Gene count
Count data: 25,559
TPM data: 14,222
Data use policy
NBDC data sharing policy (JGAP000001)