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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

E-GEAD-745

Type of data
NGS (Micro-C and Region Capture Micro-C)
NGS (CITE-seq and 5' single-cell RNA-seq)
NGS (5' and 3' single-cell RNA-seq)
NGS (Multimodal assay including single-nucleus ATAC-seq, 3' and 5' single-nucleus RNA-seq, and 5' single-cell RNA-seq)
NGS (MAS-seq)
NGS (CAGE-seq and NET-CAGE-seq)
Access criteria
Unrestricted-access
Total data volume
14.9 MB
File formats
  • GTF
  • TXT
Research
hum0350
Date published
2024-05-14
Date modified
2024-06-26
DDBJ Search
E-GEAD-745 (opens in a new tab)

Analysis method

MAS-seq

Materials and participants
1 healthy Japanese (2 samples)
  • Health status
    Healthy
  • Subject count
    1 (Individual)
  • Population
    Japanese
Sample description
polyA RNA extracted from CD4 positive T cells isolated from whole blood
  • Tissue
    CD4+ T cell
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
scRNA-seq
Target
N/A
Reagent kit
MAS-Seq for 10x Single Cell 3'
Fragmentation
N/A
Platform
PacBio Sequel II
Read type
Paired-end
Read length
N/A
Reference genome
GRCh38
Analysis method
CCS software version 6.3.0, SMRT Link version 12, Stringtie2 version 2.2.1
Data use policy
NBDC data sharing policy (JGAP000001)