Dataset ID

E-GEAD-740

Name: E-GEAD-740: NGS (Micro-C and Region Capture Micro-C), NGS (CITE-seq and 5' single-cell RNA-seq), NGS (5' and 3' single-cell RNA-seq), NGS (Multimodal assay including single-nucleus ATAC-seq, 3' and 5' single-nucleus RNA-seq, and 5' single-cell RNA-seq), NGS (MAS-seq), NGS (CAGE-seq and NET-CAGE-seq)
Published: 2024-05-14

Type of data: NGS (Micro-C and Region Capture Micro-C)
NGS (CITE-seq and 5' single-cell RNA-seq)
NGS (5' and 3' single-cell RNA-seq)
NGS (Multimodal assay including single-nucleus ATAC-seq, 3' and 5' single-nucleus RNA-seq, and 5' single-cell RNA-seq)
NGS (MAS-seq)
NGS (CAGE-seq and NET-CAGE-seq)
Access criteria: Unrestricted-access
Total data volume: 3.7 GB
File formats: BED
TXT
TAR
Research: hum0350
Date published: 2024-05-14
Date modified: 2024-06-29
DDBJ Search: E-GEAD-740 (opens in a new tab)

Analysis method

CITE-seq + scRNA-seq (5')

Materials and participants: 3 healthy Japanese (8 samples); Health status
Healthy
Subject count
3 (Mixed)
Population
Japanese
Sample description: Cell surface proteins and total RNA of CD4-positive T cells isolated from whole blood; Tissue
CD4+ T cell, Peripheral blood
Tumor / normal
Normal
Sample provider: N/A
Experimental method: CITE-seq
scRNA-seq
Target: N/A
Reagent kit: Chromium Single Cell 5' Feature Barcode Library Kit
Fragmentation: included in the above library construction kit
Platform: Illumina NovaSeq 6000
Read type: Paired-end
Read length: 73 bp
Reference genome: GRCh38
Analysis method: Cell Ranger version 5.0.1
Data use policy: NBDC data sharing policy (JGAP000001)