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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

DRA016520

Type of data
NGS (Visium Spatial Gene Expression), histological image
Access criteria
Unrestricted-access
Total data volume
46.1 GB
File formats
  • FASTQ
Research
hum0356
Date published
2024-04-18
Date modified
2024-04-19
DDBJ Search
DRA016520 (opens in a new tab)

Analysis method

Visium spatial transcriptomics + histological image

Materials and participants
colon cancer (ICD10: D01.0): 2 cases (early colorectal cancer: 1 case, advanced colorectal cancer: 1 case)
fragment tumor tissue section: 2 samples
  • Health status
    Affected
  • Subject count
    2 (Individual)
Disease
  • colon cancer
Sample description
RNAs extracted from sample tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Histological image
Spatial transcriptomics
Target
N/A
Sample processing
Histological staining: hematoxylin-eosin staining
Reagent kit
Visium Spatial Gene Expression
Fragmentation
included in the above library construction kit (enzymatic fragmentation)
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
118 bp
Reference genome
GRCh38
Analysis method
spaceranger-1.2.1
Data use policy
NBDC data sharing policy (JGAP000001)