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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

DRA006684

Type of data
MAG, Viral genome and CRISPR spacers of Microbial genome
Access criteria
Unrestricted-access
Total data volume
334 GB
File formats
  • FASTQ
Research
hum0197
Date published
2019-02-01
Date modified
2019-02-02
DDBJ Search
DRA006684 (opens in a new tab)

Analysis method

Metagenomics

Materials and participants
Japanese gut microbiome
Public data (DRA006684)
  • Population
    Japanese
Sample description
DRA006684
  • Tissue
    Gut microbiome
Experimental method
Metagenomics
Platform
Illumina HiSeq 2500
Illumina HiSeq 3000
Illumina NovaSeq 6000
Analysis method
De novo assembly with metaspades was performed. Then, binning with dastools (metabat2, maxbin2, concoct) was applied.
Processed data type
MAG
Data use policy
NBDC data sharing policy (JGAP000001)

NGS (WGS)

Materials and participants
Japanese gut microbiome
Public data (DRA006684)
  • Population
    Japanese
Sample description
DRA006684
  • Tissue
    Gut microbiome
Sample provider
N/A
Experimental method
WGS
Target
N/A
Platform
Illumina HiSeq 2500
Illumina HiSeq 3000
Illumina NovaSeq 6000
Analysis method
De novo assembly with metaspades was performed. Then, viral contigs were detected with virfinder and virsorter.
INSDC Sequence Accession
EMNW01000001-EMNW01002579
Data use policy
NBDC data sharing policy (JGAP000001)

NGS (WGS)

Materials and participants
Japanese gut microbiome
Public data (DRA006684)
  • Population
    Japanese
Sample description
DRA006684
  • Tissue
    Gut microbiome
Experimental method
Metagenomics
Platform
Illumina HiSeq 2500
Illumina HiSeq 3000
Illumina NovaSeq 6000
Analysis method
MINCED was applied to the MAGs.
Data use policy
NBDC data sharing policy (JGAP000001)