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Dataset ID

DRA006296

Type of data: NGS (RNA-seq)
Access criteria: Unrestricted-access
Total data volume: 2.2 TB
File formats: FASTQ
Research: hum0115
Date published: 2019-10-18
Date modified: 2020-05-08
DDBJ Search: DRA006296 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants: TF-hESC lines: total 2300 samples
(437 genes x [1 or 2 lines] x [2 or more culture conditions]); Subject count
2300 (Sample)
Sample description: mRNA extracted from TF-hESC cells under each condition; Tumor / normal
Normal
Cell line: hESC
iPSC
Sample provider: https://www2.brc.riken.jp/lab/cell/detail.cgi?cell_no=HES0008
Experimental method: RNA-seq
Target: N/A
Reagent kit: SureSelect Strand-Specific RNA Library Prep Kit
Fragmentation: RNA Seq Fragmentation Mix and heat treatment (94℃)
Platform: Illumina HiSeq 2000
Illumina HiSeq 2500
Read type: Mixed
Read length: Single-end: 50 bp
Paired-end: 202 bp
Paired-end: 302 bp
Data use policy: NBDC data sharing policy (JGAP000001)