NBDC Research ID: hum0502.v1

SUMMARY

Aims: To clarify the comprehensive gene expression profiles, transcriptome analysis using frozen tumor tissues from patients with cervical cancer was conducted.

Methods: RNA sequencing was conducted using RNA isolated from frozen cancer tissues obtained from the 29 patients with cervical cancer

Participants/Materials: Twenty-nine patients with cervical cancer underwent surgical treatment at the National Cancer Center Hospital between 2002 and 2020

Dataset ID	Type of Data	Criteria	Release Date
JGAS000803	NGS (RNA-seq)	Controlled-access (Type I)	2025/06/05

*Release Note

*Data users need to apply an application for Using NBDC Human Data to reach the Controlled-access Data. Learn more

MOLECULAR DATA

JGAS000803


Participants/Materials	cervical cancer (ICD10: C539): 29 cases tumor tissue: 29 samples
Targets	RNA-seq
Target Loci for Capture Methods	-
Platform	Illumina [NovaSeq 6000]
Library Source	RNAs extracted from tumor tissues
Cell Lines	-
Library Construction (kit name)	TruSeq Stranded mRNA Library Prep Kit
Fragmentation Methods	Ultrasonic fragmentation (Covaris)
Spot Type	Paired-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers)	150 bp x 2
Japanese Genotype-phenotype Archive Dataset ID	JGAD000945
Total Data Volume	144.9 GB (fastq)
Comments (Policies)	NBDC policy

DATA PROVIDER

Principal Investigator: Kouya Shiraishi

Affiliation: Department of Clinical Genomics, National Cancer Center Research Institute

Project / Group Name: Comprehensive Somatic Genomic Analysis to Uncover the Molecular Pathogenesis and Therapeutic Targets of Cervical Cancer

Funds / Grants (Research Project Number):

Name	Title	Project Number
KAKENHI Grant-in-Aid for Scientific Research (C)	Identification of Novel Genomic Profiles as Potential Therapeutic Targets for Cervical Cancer	22K09563

PUBLICATIONS

	Title	DOI	Dataset ID
1
2

USRES (Controlled-access Data)

Principal Investigator	Affiliation	Country/Region	Research Title	Data in Use (Dataset ID)	Period of Data Use