hum0396 Data Summary
Cohort survey
Dataset ID: JGAD000810 (32.7 MB)
Restrictions on data use: NBDC policy
| List of Data Items | document_sukoyaka.tar.gz |
【Attributes】
| Participants | 50 healthy individuals (2020) |
| Test items | year, age, sex, region, with/without discontinuation |
| File Name | summer/winter: research.txt (3 KB / 3 KB) |
【Blood test】
| Participants | 50 healthy individuals (2020) |
| Test items | 【Hematological】White blood cell count (×10³/μl), Red blood cell count (×10⁴/μl), Hemoglobin (g/dl), Hematocrit (％), Platelet count (×10⁴/μl) 【Liver-related】GOT (IU/l), GPT (IU/l), γ-GTP (IU/l), ALP (IU/l), LDH (IU/l) 【Kidney-related】BUN (mg/dl), Serum creatinine (mg/dl), Uric acid (mg/dl) 【Blood lipids】Total cholesterol (mg/dl), Triglyceride (mg/dl), HDL cholesterol(mg/dl), LDL cholesterol (mg/dl) 【Blood sugar】Blood sugar (mg/dl), HbA1c (％: NGSP value) 【Hormone】Thyroid stimulating hormone (μIU/ml) 【Other chemical】Total protein (g/dl), Albumin (g/dl), Coline esterase (U/l), Sodium (mEq/l), Chlorine (mEq/l), Magnesium (mg/dl), Calcium (mg/dl), Iron (μg/dl) |
| File Name | summer/winter: blood_test.txt (18 KB / 18 KB) |
【Urinalysis】
| Participants | 50 healthy individuals (2020) |
| Test items | Glucose, Protein, Urobilinogen, Bilirubin, Ketone, pH, Occult blood, Serotonin metabolites (5-HIAA: mg/l) |
| File Name | summer/winter: urinalysis.txt (4 KB / 4 KB) |
【Body measurement】
| Participants | 50 healthy individuals (2020) |
| Test items | Blood pressure (systolic and diastolic: mmHg), Heart rate (bpm), Height (cm), Waist circumference (cm), Weight (kg), BMI（kg/m²), Body fat percentage (％) |
| File Name | summer/winter: physical_vital.txt (5 KB / 5 KB) |
【Questionnaire】
| Participants | 50 healthy individuals (2020) |
| Test items | questionnaire for education, occupation, family structure, past medical history, history of the present illness, stress/sleep, etc. questionnaire for the use of antibiotics, characteristics of feces |
| File Name | summer/winter: questionnaire.txt (95 KB / 80 KB) summer/questionnaire_antibiotic.csv (5 KB) |
| Description File | document_sukoyaka.tar.gz |
【Interview】
| Participants | 50 healthy individuals (2020) |
| Test items | meal time before the examination, with/without blood donation, with/without pregnancy/breastfeeding |
| File Name | summer/winter: interview.txt (3 KB / 3 KB) |
【Sleep diary】
| Participants | 50 healthy individuals (2020) |
| Test items | questionnaire for physical condition before sleep, awakenings, physical condition after awakening, etc. |
| File Name | summer/winter: diary_calc.txt (78 KB / 76 KB) |
【Heart rate/brain wave during sleep】
| Participants | 50 healthy individuals (2020) |
| Test items | Heart rate and brain wave data during sleep (90 items includes sleep duration, number of awakenings, average heart rate) |
| File Name | SIP2B観察研究（心拍と脳波）_2020_summer/winter.csv (50 KB / 50 KB) |
| Description File | document_sukoyaka.tar.gz |
【Microbiome composition】
| Type of Data | Participants | File Name |
| Abundance data of KEGG Orthology for short-read shotgun metagenomic sequencing data of feces | 50 healthy individuals (2020) | metagenomics/summary_functional_ko_abundances_Miyazaki.tsv (2,900 KB) |
| Species-level abundance data computed by Kraken2 for short-read shotgun metagenomic sequencing data of feces | 50 healthy individuals (2020) | metataxonomics/summary_taxonomic_species_abundances_Miyazaki.tsv (1,800 KB) |
| Genus-level abundance data computed by Kraken2 for short-read shotgun metagenomic sequencing data of feces | 50 healthy individuals (2020) | metataxonomics/summary_taxonomic_genus_abundances_Miyazaki.tsv (386 KB) |
| Family-level abundance data computed by Kraken2 for short-read shotgun metagenomic sequencing data of feces | 50 healthy individuals (2020) | metataxonomics/summary_taxonomic_family_abundances_Miyazaki.tsv (83 KB) |
| Phylum-level abundance data computed by Kraken2 for short-read shotgun metagenomic sequencing data of feces | 50 healthy individuals (2020) | metataxonomics/summary_taxonomic_phylum_abundances_Miyazaki.tsv (12 KB) |
| Description File | - | document_sukoyaka.tar.gz |
【Nutrient intake】
| Participants | 50 healthy individuals (2020) |
| Test items | Intakes of 57 nutrients includes total protein and sodium, and intakes of 148 food groups includes rice and bean curd |
| File Name | 栄養素摂取量_食品群別摂取量/SIP2020夏_栄養素摂取量_食品群別摂取量.txt（45 KB） 栄養素摂取量_食品群別摂取量/SIP2020冬_栄養素摂取量_食品群別摂取量.txt（46 KB） |
| Description File | document_sukoyaka.tar.gz |
【Food frequency questionnaire】
| Participants | 50 healthy individuals (2020) |
| Test items | 705-item food frequency questionnaire includes beef and octopus, etc |
| File Name | 2020_winter/ffq_all.txt（300 KB） |
| Description File |
【Metabolomics】
| Type of Data | Participants | File Name |
| Targeted metabolomics data for hydrophilic metabolites in blood plasma | 50 healthy individuals (2020) | metabolomics/summary_targeted_blood_datasets_Miyazaki.tsv（286 KB） |
| Targeted metabolomics data for hydrophilic metabolites in feces | 50 healthy individuals (2020) | metabolomics/summary_targeted_feces_datasets_Miyazaki.tsv（238 KB） |
| Non-targeted metabolomics data for hydrophilic metabolites in feces | 50 healthy individuals (2020) | metabolomics/summary_untargeted_datasets_Miyazaki.tsv（3,200 KB） |
| Targeted metabolomics data for bileacids in feces | 50 healthy individuals (2020) | metabolomics/summary_bileacids_datasets_Miyazaki.tsv（9 KB） |
| Non-targeted metabolomics data for lipids in feces | 50 healthy individuals (2020) | metabolomics/summary_lipids_datasets_Miyazaki.tsv（144 KB） |
| Non-targeted metabolomics data for proteins in blood plasma | 50 healthy individuals (2020) | metabolomics/summary_olink_datasets_Miyazaki.tsv（77 KB） |
| Description File | - | document_sukoyaka.tar.gz |