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hum0395 Data Summary

Cohort survey

Dataset ID: JGAD000808 (492.0 MB)

Restrictions on data use: NBDC policy
List of Data Items document_sukoyaka.tar.gz

【Attributes】
Participants 642 healthy individuals (2019 summer/winter) 321 healthy individuals (2020 summer/winter)
Test items year, age, sex, region, with/without discontinuation
File Name summer/winter: research.txt (39 KB / 37 KB) 2020_summer/winter: research.txt (20 KB / 19 KB)

【Blood test】
Participants 642 healthy individuals (2019 summer/winter) 321 healthy individuals (2020 summer), 307 healthy individuals (2020 winter)
Test items 【Hematological】White blood cell count (×10³/μl), Red blood cell count (×10⁴/μl), Hemoglobin (g/dl), Hematocrit (％), Platelet count (×10⁴/μl) 【Liver-related】GOT (IU/l), GPT (IU/l), γ-GTP (IU/l), ALP (IU/l), LDH (IU/l) 【Kidney-related】BUN (mg/dl), Serum creatinine (mg/dl), Uric acid (mg/dl) 【Blood lipids】Total cholesterol (mg/dl), Triglyceride (mg/dl), HDL cholesterol(mg/dl), LDL cholesterol (mg/dl) 【Blood sugar】Blood sugar (mg/dl), HbA1c (％: NGSP value) 【Hormone】Thyroid stimulating hormone (μIU/ml) 【Other chemical】Total protein (g/dl), Albumin (g/dl), Coline esterase (U/l), Sodium (mEq/l), Chlorine (mEq/l), Magnesium (mg/dl), Calcium (mg/dl), Iron (μg/dl)
File Name summer/winter: blood_test.txt (126 KB / 116 KB) 2020_summer/winter: blood_test.txt (69 KB / 65 KB)

【Urinalysis】
Participants 642 healthy individuals (2019 summer/winter) 321 healthy individuals (2020 summer), 307 healthy individuals (2020 winter)
Test items Glucose, Protein, Urobilinogen, Bilirubin, Ketone, pH, Occult blood, Serotonin metabolites (5-HIAA: mg/l)
File Name summer/winter: urinalysis.txt (49 KB / 47 KB) 2020_summer/winter: urinalysis.txt (25 KB / 24 KB)

【Body measurement】
Participants 642 healthy individuals (2019 summer/winter) 321 healthy individuals (2020 summer), 307 healthy individuals (2020 winter)
Test items Blood pressure (systolic and diastolic: mmHg), Heart rate (bpm), Height (cm), Waist circumference (cm), Weight (kg), BMI（kg/m²), Body fat percentage (％)
File Name summer/winter: physical_vital.txt (60 KB / 56 KB) 2020_summer/winter: physical_vital.txt (30 KB / 28 KB)

【Questionnaire】
Participants 642 healthy individuals (2019 summer/winter) 321 healthy individuals (2020 summer), 307 healthy individuals (2020 winter)
Test items summer: questionnaire for education, occupation, family structure, past medical history, history of the present illness, stress/sleep, etc. questionnaire for the use of antibiotics, characteristics of feces winter: history of the present illness, questionnaire for stress/sleep, etc.
File Name summer/winter: questionnaire.txt (796 KB / 581 KB) 2019_summer: questionaire_antibiotics_2019.csv (72 KB) 2020_summer/winter: questionnaire.txt (420 KB / 310 KB) questionaire_antibiotic_2020.csv (29 KB)
Description File document_sukoyaka.tar.gz

【Interview】
Participants 642 healthy individuals (2019 summer/winter) 321 healthy individuals (2020 summer), 307 healthy individuals (2020 winter)
Test items meal time before the examination, with/without blood donation, with/without pregnancy/breastfeeding
File Name summer/winter: interview.txt (42 KB / 38 KB) 2020_summer/winter: interview.txt (20 KB / 19 KB)

【Sleep diary】
Participants 642 healthy individuals (2019 summer/winter) 321 healthy individuals (2020 summer), 306 healthy individuals (2020 winter)
Test items questionnaire for physical condition before sleep, awakenings, physical condition after awakening, etc.
File Name summer/winter: diary_calc.txt (805 KB / 805 KB) 2020_summer/winter: diary_calc.txt (450 KB / 428 KB)

【Heart rate/brain wave during sleep】
Participants 625 healthy individuals (2019 summer), 575 healthy individuals (2019 winter) 319 healthy individuals (2020 summer), 308 healthy individuals (2020 winter)
Test items Heart rate and brain wave data during sleep (90 items includes sleep duration, number of awakenings, average heart rate)
File Name 2019_summer_vital.tar.gz/2019_winter_vital.tar.gz (808 KB / 1700 KB) 2020_summer_vital.tar.gz/2020_winter_vital.tar.gz (420 KB / 881 KB)
Description File document_sukoyaka.tar.gz

【Microbiome composition】
Type of Data Participants File Name
Abundance data of KEGG Orthology for short-read shotgun metagenomic sequencing data of feces 641 healthy individuals (2019 summer) 158 healthy individuals (2019 winter) 309 healthy individuals (2020 summer/winter) summary_functional_ko_abundances_20192020_Hokkaido.tsv (61800 KB)
Species-level abundance data computed by Kraken2 for short-read shotgun metagenomic sequencing data of feces 641 healthy individuals (2019 summer) 158 healthy individuals (2019 winter) 309 healthy individuals (2020 summer/winter) summary_taxonomic_species_abundances_20192020_Hokkaido.tsv (30300 KB)
Genus-level abundance data computed by Kraken2 for short-read shotgun metagenomic sequencing data of feces 641 healthy individuals (2019 summer) 158 healthy individuals (2019 winter) 309 healthy individuals (2020 summer/winter) summary_taxonomic_genus_abundances_20192020_Hokkaido.tsv (7700 KB)
Family-level abundance data computed by Kraken2 for short-read shotgun metagenomic sequencing data of feces 641 healthy individuals (2019 summer) 158 healthy individuals (2019 winter) 309 healthy individuals (2020 summer/winter) summary_taxonomic_family_abundances_20192020_Hokkaido.tsv (1700 KB)
Phylum-level abundance data computed by Kraken2 for short-read shotgun metagenomic sequencing data of feces 641 healthy individuals (2019 summer) 158 healthy individuals (2019 winter) 309 healthy individuals (2020 summer/winter) summary_taxonomic_phylum_abundances_20192020_Hokkaido.tsv (246 KB)
Description File - document_sukoyaka.tar.gz

【Nutrient intake】
Participants 625 healthy individuals (2019 summer), 579 healthy individuals (2019 winter) 316 healthy individuals (2020 summer), 303 healthy individuals (2020 winter)
Test items Intakes of 57 nutrients includes total protein and sodium, and intakes of 148 food groups includes rice and bean curd
File Name 2019_summer_vital.tar.gz/2019_winter_vital.tar.gz (808 KB / 1700 KB) 2020_summer_vital.tar.gz/2020_winter_vital.tar.gz (420 KB / 881 KB)
Description File document_sukoyaka.tar.gz

【Food frequency questionnaire】
Participants 609 healthy individuals (2019 winter) 307 healthy individuals (2020 winter)
Test items 705-item food frequency questionnaire includes beef and octopus, etc
File Name 2019_winter/ffq_all.txt (2,900 KB) 2020_winter/ffq_all.txt (1,500 KB)
Description File document_sukoyaka.tar.gz

【Metabolomics】
Type of Data Participants File Name
Targeted metabolomics data for hydrophilic metabolites in blood plasma 160 healthy individuals (2019 winter) 43 healthy individuals (2020 summer) floraindex_blood_2019_winter.txt (359 KB) metabolomics/summary_targeted_blood_datasets2020_Hokkaido.tsv (248 KB)
Targeted metabolomics data for hydrophilic metabolites in feces 158 healthy individuals (2019 winter) 43 healthy individuals (2020 summer) floraindex_feces_2019_winter.txt (274 KB) metabolomics/summary_targeted_feces_datasets2020_Hokkaido.tsv (207 KB)
Non-targeted metabolomics data for hydrophilic metabolites in feces 158 healthy individuals (2019 winter) 43 healthy individuals (2020 summer) floraindex_feces_nontarget_2019_winter.txt (1,500 KB) metabolomics/summary_untargeted_dataset2020_Hokkaido.tsv (2,900 KB)
Targeted metabolomics data for bileacids in feces 158 healthy individuals (2019 winter) 43 healthy individuals (2020 summer) kazusa_feces_2019_winter.txt (27 KB) metabolomics/summary_bileacids_dataset2020_Hokkaido.tsv (8 KB)
Non-targeted metabolomics data for lipids in feces 158 healthy individuals (2019 winter) 43 healthy individuals (2020 summer) kazusa_feces_nontarget_2019_winter.tsv (382 KB) metabolomics/summary_lipids_dataset2020_Hokkaido.tsv (128 KB)
Non-targeted metabolomics data for proteins in blood plasma 160 healthy individuals (2019 winter) 43 healthy individuals (2020 summer) olink_blood_2019_winter.tsv (241 KB) metabolomics/summary_olink_datasets2020_Hokkaido.tsv (67 KB)
Description File - document_sukoyaka.tar.gz