NBDC Research ID: hum0390.v1
SUMMARY
Aims: To establish a knowledge basis for human reproduction and development by conducting genomic and epigenomic analyses on the cells and tissues of organs essential for pregnancy.
Methods: Total RNA samples from endometrial tissues were subjected to RNA sequencing analysis.
Participants/Materials: Endometrial tissues from chronic endometritis cases and control cases
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000621 | NGS (RNA-seq) | Controlled-access (Type I) | 2023/06/30 |
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MOLECULAR DATA
| Participants/Materials |
chronic endometritis (ICD10: N71.1): 24 cases 33 control cases (without chronic endometritis) |
| Targets | RNA-seq |
| Target Loci for Capture Methods | - |
| Platform | Illumina [HiSeq X Ten] |
| Library Source | RNAs extracted from endometrial tissues |
| Cell Lines | - |
| Library Construction (kit name) | NEBNext Ultra II Directional RNA Library Prep Kit |
| Fragmentation Methods | Alkaline hydrolysis of RNA |
| Spot Type | Paired-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 151 bp |
| Japanese Genotype-phenotype Archive Dataset ID | JGAD000750 |
| Total Data Volume | 100 GB (fastq) |
| Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Keiji Kuroda
Affiliation: Center for Reproductive Medicine and Endoscopy, Sugiyama Clinic Marunouchi
Project / Group Name: -
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| Practical Research Project for Rare/Intractable Diseases, Japan Agency for Medical Research and Development (AMED) | Diagnosis of rare diseases and elucidation of molecular pathological states by using epigenetic information | JP22ek0109489 |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | Gene expression signatures associated with chronic endometritis revealed by RNA sequencing | doi: 10.3389/fmed.2023.1185284 | JGAD000750 |
| 2 |
USRES (Controlled-access Data)
| Principal Investigator | Affiliation | Country/Region | Research Title | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|---|---|
