NBDC Research ID: hum0359.v1



Aims: The pathogenesis of T/NK cell lymphoma is heterogeneous and complex, and optimal treatment has not been established, partly because the disease is relatively rare. Comprehensive analysis of genomic, epigenomic, and gene expression abnormalities occurring in T/NK cell lymphomas may not only clarify the pathogenesis of the disease, but also identify distinctive disease units, new molecular targets, and prognostic factors. In this study, we will comprehensively analyze the genome, epigenome, and gene expression of T/NK cell lymphoma, and clarify the molecular pathogenesis of the disease by examining the relationship with histopathology, disease type, and prognosis.

Methods: Targeted DNA sequencing of tumor (lymphoma) tissues

Participants/Materials: Extranodal NK/T-cell lymphoma, nasal type


Dataset IDType of DataCriteriaRelease Date
JGAS000548 NGS (Target Capture) Controlled-access (Type I) 2022/07/01

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Participants/Materials Extranodal NK/T-cell lymphoma, nasal type (ICD10: C86.0): 67 cases
Targets Target Capture
Target Loci for Capture Methods ARID1A, ASXL3, BCOR, CDKN2A, DDX3X, DNMT3A, ECSIT, EP300, FAT4, HDAC9, IDH1, IDH2, JAK1, JAK2, JAK3, KMT2C, KMT2D, MGA, MSN, NRAS, STAT1, STAT3, STAT5A, STAT5B, STAT6, TET1, TET2, TET3, TP53
Platform Illumina [NovaSeq 6000]
Library Source DNAs extracted from tumor tissues
Cell Lines -
Library Construction (kit name) xGen Prism DNA Library Prep Kit
Fragmentation Methods Ultrasonic fragmentation (Covaris M220)
Spot Type Paired-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers) 142 bp
Mapping Methods CLC Genomics Workbench version 21
Mapping Quality -
Reference Genome Sequence hg19
Coverage (Depth) -
Japanese Genotype-phenotype Archive Dataset ID JGAD000668
Total Data Volume 10.6 GB (bam)
Comments (Policies) NBDC policy



Principal Investigator: Naoki Oishi

Affiliation: Department of Pathology, University of Yamanashi

Project / Group Name: -

Funds / Grants (Research Project Number):

NameTitleProject Number
KAKENHI Grant-in-Aid for Scientific Research (C) Histopathologic Features Associated with Molecular Subtypes of Extranodal NK/T Cell Lymphoma 21K06883
Kurozumi Medical Foundation Development of Molecular-based Pathologic Prognostic Stratification for Extranodal NK/T cell lymphoma, Nasal Type -



TitleDOIDataset ID
1 Genetic and immunohistochemical profiling of NK/T-cell Lymphomas reveals prognostically relevant BCOR-MYC association doi: 10.1182/bloodadvances.2022007541 JGAD000668


USRES (Controlled-access Data)

Principal InvestigatorAffiliationCountry/RegionResearch TitleData in Use (Dataset ID)Period of Data Use