NBDC Research ID: hum0306.v1

SUMMARY

Aims: Cancer genome sequencing and analysis in international cancer genome collaboration ICGC for establishment of cancer genome catalogue

Methods: Whole genome sequencing with Nanopore sequencer

Participants/Materials: DNA extracted from tumor tissues of 9 liver cancer patients (also analyzed in hum0158 with short-read sequencer)

Dataset ID	Type of Data	Criteria	Release Date
JGAS000361	NGS (WGS)	Controlled-access (Type I)	2021/10/15

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MOLECULAR DATA


Participants/Materials	liver cancer (ICD10：C220): 9 cases
Targets	WGS
Target Loci for Capture Methods	-
Platform	Nanopore [MinION]
Library Source	DNAs extracted from tumor tissues
Cell Lines	-
Library Construction (kit name)	SQK-LSK109
Fragmentation Methods	-
Spot Type	Single-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers)	4715-12070 bp (7875 bp on average)
Japanese Genotype-phenotype Archive Dataset ID	JGAD000475
Total Data Volume	201.3 GB (fastq)
Comments (Policies)	NBDC policy

Principal Investigator: Hidewaki Nakagawa

Affiliation: Laboratory of Genome Sequencing Analysis, RIKEN Center for Integrative Medical Sciences

Project / Group Name: -

Funds / Grants (Research Project Number):

Name	Title	Project Number
KAKENHI Grant-in-Aid for Scientific Research (A)	Multi-omics analysis for hepato-biliary-pancreatic cancers	18H04049

	Title	DOI	Dataset ID
1	Aberrant integration of Hepatitis B virus DNA promotes major restructuring of human hepatocellular carcinoma genome architecture	doi: 10.1038/s41467-021-26805-8	JGAD000475
2

Principal Investigator	Affiliation	Country/Region	Research Title	Data in Use (Dataset ID)	Period of Data Use