NBDC Research ID: hum0297.v1

 

SUMMARY

Aims: To comprehensively clarify the genetic, neural, experiential and social influences that contribute to the diversity of color vision in humans, using approaches at various levels from genes to cognition.

Methods: Polymorphism analysis of a group of opsin genes related to color vision and their surrounding regions was performed using DNA extracted from saliva.

Participants/Materials: 1 healthy donor

 

Dataset IDType of DataCriteriaRelease Date
JGAS000348 NGS (Target Capture) Controlled-access (Type I) 2022/09/15

*Release Note

*Data users need to apply an application for Using NBDC Human Data to reach the Controlled-access Data. Learn more

 

MOLECULAR DATA

JGAS000348
Participants/Materials 1 healthy donor
Targets WGS
Target Loci for Capture Methods -
Platform

Illumina [NovaSeq 6000]

Nanopore [PromethION]
Library Source DNAs extracted from saliva of healthy donor
Cell Lines -
Library Construction (kit name)

Illumina: TruSeq DNA Nano

Nanopore: SQK-LSK109
Fragmentation Methods

Illumina: Ultrasonic fragmentation (Covaris)

Nanopore: -
Spot Type

Illumina: Paired-end

Nanopore: Single-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers)

Illumina: 300 bp

Nanopore: 8248 bp on average
Japanese Genotype-phenotype Archive Dataset ID JGAD000462
Total Data Volume 249.5 GB（fastq）
Comments (Policies) NBDC policy

 

DATA PROVIDER

Principal Investigator: Chihiro Hiramatsu

Affiliation: Sensory Diversity Laboratory Department of Human Science Faculty of Design, Kyushu University

Project / Group Name: Laboratory of Sensory Diversity

Funds / Grants (Research Project Number):

NameTitleProject Number
KAKENHI Grant-in-Aid for Scientific Research (B) Commonality and diversity of neural representations associated with the conscious experience of color 19H04198

 

PUBLICATIONS

TitleDOIDataset ID
1
2

 

USRES (Controlled-access Data)

Principal InvestigatorAffiliationCountry/RegionResearch TitleData in Use (Dataset ID)Period of Data Use