NBDC Research ID: hum0192.v1
SUMMARY
Aims: Detection of mutation in liquid biopsy (cell free DNA)
Methods: Target sequence by using of NCCv2 Oncopanel
Participants/Materials: Colon cancer patients
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000196 | NGS (Target Capture) | Controlled-access (Type I) | 2021/04/23 |
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MOLECULAR DATA
| Participants/Materials | Colon cancer (ICD10: C18.9, C20): 20 cases |
| Targets | Target Capture |
| Target Loci for Capture Methods |
NCC Oncopanel v2 https://www.ncc.go.jp/en/information/press_release/20190717/20190717152024.html |
| Platform | Illumina [NovaSeq 6000] |
| Library Source | cell free DNA extracted from plasma of peripheral blood |
| Cell Lines | - |
| Library Construction (kit name) | SureSelect XT HS |
| Fragmentation Methods | - |
| Spot Type | Paired-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 300 bp |
| Japanese Genotype-phenotype Archive Dataset ID | JGAD000279 |
| Total Data Volume | 50 GB (fastq) |
| Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Masaki Nakamura
Affiliation: Department of Radiation Oncology, National Cancer Center Hospital East
Project / Group Name: -
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| Grant-in-Aid for Early-Career Scientists | Research of cell free DNA as a prognostic biomarker of oligometastasis | 18K15611 |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | Liquid Biopsy Cell-free DNA Biomarkers in Patients With Oligometastatic Colorectal Cancer Treated by Ablative Radiotherapy | doi: 10.21873/anticanres.14835 | JGAD000279 |
| 2 |
USRES (Controlled-access Data)
| Principal Investigator: | Affiliation: | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|
