NBDC Research ID: hum0161.v1
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SUMMARY
Aims: To investigate genomic alterations of Japanese hepatoblastomas
Methods: DNAs were extracted from hepatoblastoma tissues and paired non-cancer (normal) tissues. NGS libaraies were prepared by using TruSeq Nano DNA Low Throughput Library Prep Kit for whole genome sequencing (WGS). Sequencing was perfomred by Illumina HiSeq 2500.
Participants/Materials: DNAs extracted from cancer tissues and non-cancer tissues of Japanese hepatoblastoma patients.
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| JGAS000156 | NGS (WGS) | Controlled-access (Type I) | 2021/06/04 |
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MOLECULAR DATA
| Participants/Materials |
hepatoblastoma (ICD10: C22.2): 33 cases cancer tissues: 33 samples paired non-cancer tissues: 33 samples |
| Targets | WGS |
| Target Loci for Capture Methods | - |
| Platform | Illumina [HiSeq 2500] |
| Library Source | DNAs extracted from cancer tissues and paired non-cancer tissues from hepatoblastoma patients |
| Cell Lines | - |
| Library Construction (kit name) | TruSeq Nano DNA Low Throughput Library Prep Kit |
| Fragmentation Methods | Ultrasonic fragmentation (Covaris) |
| Spot Type | Paired-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 126 bp |
| Japanese Genotype-phenotype Archive Dataset ID | JGAD000234 |
| Total Data Volume | 4 TB (fastq) |
| Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Hidewaki Nakagawa
Affiliation: RIKEN Center for Integrative Medical Sciences
Project / Group Name: -
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| - |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | |||
| 2 |
USERS (Controlled-access Data)
| Principal Investigator: | Affiliation: | Data in Use (Dataset ID) | Period of Data Use |
|---|---|---|---|
