NBDC Research ID: hum0161.v2

 

SUMMARY

Aims: To investigate genomic alterations of Japanese hepatoblastomas

Methods: DNAs were extracted from hepatoblastoma tissues and paired non-cancer (normal) tissues. NGS libaraies were prepared by using TruSeq Nano DNA Low Throughput Library Prep Kit for whole genome sequencing (WGS). Sequencing was perfomred by Illumina HiSeq 2500.

Participants/Materials: DNAs extracted from cancer tissues and non-cancer tissues of Japanese hepatoblastoma patients.

 

Dataset IDType of DataCriteriaRelease Date
JGAS000156 NGS (WGS) Controlled-access (Type I) 2021/06/04
JGAS000688 Processed data of JGAD000234 by JGA Controlled-access (Type I) 2022/12/27

*Release Note

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MOLECULAR DATA

JGAS000156
Participants/Materials

hepatoblastoma (ICD10: C22.2): 33 cases

          cancer tissues: 33 samples

          paired non-cancer tissues: 33 samples
Targets WGS
Target Loci for Capture Methods -
Platform Illumina [HiSeq 2500]
Library Source DNAs extracted from cancer tissues and paired non-cancer tissues from hepatoblastoma patients
Cell Lines -
Library Construction (kit name) TruSeq Nano DNA Low Throughput Library Prep Kit
Fragmentation Methods Ultrasonic fragmentation (Covaris)
Spot Type Paired-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers) 126 bp
Japanese Genotype-phenotype Archive Dataset ID JGAD000234
Dataset ID of the Processed data by JGA

JGAD000688

The way to Process
Total Data Volume 4 TB (fastq)
Comments (Policies) NBDC policy

 

DATA PROVIDER

Principal Investigator: Hidewaki Nakagawa

Affiliation: RIKEN Center for Integrative Medical Sciences

Project / Group Name: -

Funds / Grants (Research Project Number):

Name Title Project Number
-

 

PUBLICATIONS

TitleDOIDataset ID
1
2

 

USERS (Controlled-access Data)

Principal InvestigatorAffiliationCountry/RegionResearch TitleData in Use (Dataset ID)Period of Data Use