NBDC Research ID: hum0148.v1

SUMMARY

Aims: The exploratory research of diagnositic biomarkers and therapeutic targets of renal cell carcinoma.

Methods: RNA-seq

Participants/Materials: Primary and metastatic tumor tissues of renal cell carcinomas

Dataset ID	Type of Data	Criteria	Release Date
JGAS000149	NGS (RNA-seq)	Controlled-access (Type I)	2019/06/20

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MOLECULAR DATA


Participants/Materials	renal cell carcinomas (ICD10: C64): 67 cases primary tissues: 43 cases metastatic tissues: 24 cases
Targets	RNA-seq
Target Loci for Capture Methods	-
Platform	Illumina [Genome Analyzer IIx]
Library Source	RNAs extracted from primary and metastatic tumor tissues of renal cell carcinomas
Cell Lines	-
Library Construction (kit name)	TruSeq RNA Sample Prep Kit v2
Fragmentation Methods	Heat treatment
Spot Type	Single-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers)	51 bp
Japanese Genotype-phenotype Archive Dataset ID	JGAD000223 JGAD000224 JGAD000225
Total Data Volume	67 GB (fastq)
Comments (Policies)	NBDC policy & Cancer Research Use Only

Principal Investigator: Takeshi Yuasa

Affiliation: The Cancer Institute Hospital of Japanese Foundation for Cancer Research (JFCR)

Project / Group Name: -

Funds / Grants (Research Project Number):

Name	Title	Project Number
KAKENHI Grant-in-Aid for Scientific Research (C)	Towards the personalized medicine for metastatic renal cell cancer	16K11035
Smoking Research Foundation	-	-

	Title	DOI	Dataset ID
1	ADP-ribosylation factor-like 4C is a predictive biomarker of poor prognosis in patients with renal cell carcinoma	PMID: 30906638	JGAD000223 JGAD000224 JGAD000225
2

Title

DOI

Dataset ID

ADP-ribosylation factor-like 4C is a predictive biomarker of poor prognosis in patients with renal cell carcinoma

JGAD000223

JGAD000224

JGAD000225

Principal Investigator	Affiliation	Country/Region	Research Title	Data in Use (Dataset ID)	Period of Data Use