NBDC Research ID: hum0148.v1

 

SUMMARY

Aims: The exploratory research of diagnositic biomarkers and therapeutic targets of renal cell carcinoma.

Methods: RNA-seq

Participants/Materials: Primary and metastatic tumor tissues of renal cell carcinomas

 

Dataset IDType of DataCriteriaRelease Date
JGAS000149 NGS (RNA-seq) Controlled-access (Type I) 2019/06/20

*Release Note

* Data users need to apply an application for Using NBDC Human Data to reach the Controlled-access Data. Learn more

 

MOLECULAR DATA

JGAS000149
Participants/Materials

renal cell carcinomas (ICD10: C64): 67 cases

      primary tissues: 43 cases

      metastatic tissues: 24 cases
Targets RNA-seq
Target Loci for Capture Methods -
Platform Illumina [Genome Analyzer IIx]
Library Source RNAs extracted from primary and metastatic tumor tissues of renal cell carcinomas
Cell Lines -
Library Construction (kit name) TruSeq RNA Sample Prep Kit v2
Fragmentation Methods Heat treatment
Spot Type Single-end
Read Length (without Barcodes, Adaptors, Primers, and Linkers) 51 bp
Japanese Genotype-phenotype Archive Dataset ID

JGAD000223

JGAD000224

JGAD000225
Total Data Volume 67 GB (fastq)
Comments (Policies) NBDC policy & Cancer Research Use Only

 

DATA PROVIDER

Principal Investigator: Takeshi Yuasa

Affiliation: The Cancer Institute Hospital of Japanese Foundation for Cancer Research (JFCR)

Project / Group Name: -

Funds / Grants (Research Project Number):

NameTitleProject Number
KAKENHI Grant-in-Aid for Scientific Research (C) Towards the personalized medicine for metastatic renal cell cancer 16K11035
Smoking Research Foundation - -

 

PUBLICATIONS

TitleDOIDataset ID
1 ADP-ribosylation factor-like 4C is a predictive biomarker of poor prognosis in patients with renal cell carcinoma PMID: 30906638

JGAD000223

JGAD000224

JGAD000225
2

 

USRES (Controlled-access Data)

Principal InvestigatorAffiliationCountry/RegionResearch TitleData in Use (Dataset ID)Period of Data Use