NBDC Research ID: hum0044.v1
SUMMARY
Aims: Epigenetic analysis of adult T-cell leukemia-lymphoma (ATL) cell line
Methods: ChIP-seq
Participants/Materials: ATL cell line; ED
| Dataset ID | Type of Data | Criteria | Release Date |
|---|---|---|---|
| DRA004162 | NGS (ChIP-seq) | Unrestricted-access | 2016/10/31 |
*When the research results including the data which were downloaded from NHA/DRA, are published or presented somewhere, the data user must refer the papers which are related to the data, or include in the acknowledgment. Learn more
MOLECULAR DATA
| Participants/Materials: | ED cell line derived from 1 patient with ATL |
| Targets | ChIP-seq |
| Target Loci for Capture Methods | - |
| Platform | Illumina [NextSeq 500] |
| Library Source | Chromatin DNA extracted from ED |
| Cell Lines | - |
| Library Construction (kit name) | NEBNext Ultra DNA Library Prep Kit |
| Fragmentation Methods | Bioruptor USD-200 (Diagenode) |
| Spot Type | Paired-end |
| Read Length (without Barcodes, Adaptors, Primers, and Linkers) | 300 bp |
| DDBJ Sequence Read Archive ID | DRA004162 |
| Total Data Volume | 159.5 GB (fastq) |
| Comments (Policies) | NBDC policy |
DATA PROVIDER
Principal Investigator: Satou Yorifumi
Affiliation: International Research Center for Medical Sciences, Kumamoto University
URL： http://www.caids.kumamoto-u.ac.jp/satou/research-e.html
Funds / Grants (Research Project Number):
| Name | Title | Project Number |
|---|---|---|
| KAKENHI Grant-in-Aid for Scientific Research (C) | HTLV-1 proviral analysis for the control of ATL | 26461428 |
| Takeda Science Foundation | Elucidation of the mechanisms underlying HTLV-1-mediated ATL leukemogenesis | - |
PUBLICATIONS
| Title | DOI | Dataset ID | |
|---|---|---|---|
| 1 | The retrovirus HTLV-1 inserts an ectopic CTCF-binding site into the human genome | doi: 10.1073/pnas.1423199113 | DRA004162 |
| 2 |
